Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8453398-SRR8453399/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  215,127,274
 Normal Paired: 211,362,319 (98.25%)
 Chimeric Paired: 7,947 (0.00%)
 Chimeric Ambiguous: 3,728 (0.00%)
 Unmapped: 3,753,280 (1.74%)
 Ligation Motif Present: 44,078 (0.02%)
Alignable (Normal+Chimeric Paired): 211,370,266 (98.25%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-28T19:12:03,044]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 53,852,725 (25.03%)
PCR Duplicates: 157,517,541 (73.22%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 55,034,837
Intra-fragment Reads: 25,119,275 (11.68% / 46.64%)
Below MAPQ Threshold: 8,725,092 (4.06% / 16.20%)
Hi-C Contacts: 20,008,358 (9.30% / 37.15%)
 Ligation Motif Present: 9,430  (0.00% / 0.02%)
 3' Bias (Long Range): 80% - 20%
 Pair Type %(L-I-O-R): 25% - 24% - 24% - 26%
Inter-chromosomal: 4,576,701  (2.13% / 8.50%)
Intra-chromosomal: 15,431,657  (7.17% / 28.66%)
Short Range (<20Kb): 9,037,835  (4.20% / 16.78%)
Long Range (>20Kb): 6,393,759  (2.97% / 11.87%)